It is all about the ego being put in it's proper place by daily seeking of guidance through meditation or prayer. Rational thought and logic is not all there is to us, there is also Intuitive Insight which when functioning properly (and this requires a lot of purification and insight) keeps us in synchronicity with Nature and Life.
It is not religion or the practice of it that is bad it is the lack of understanding and the usurping of power by stupid unenlightened men that is the problem. If Israel and Palestine could really experience God (Divine) in their lives, they would see how much in common they had and come to a quick resolution of differences.